Adjustment Pay Runs - UK

An Adjustment Pay Run is a pay run in its own right. It does not change anything on a previously paid/posted pay run. If you need to make changes to a pay run that has not been paid/posted then you should Roll it back and make changes at the Approval screen stage instead of processing a new Adjustment Pay Run.

Don't forget to report the run properly to the HMRC. This may include the need to set a Late Reason on the FPS - review the section on Reporting an Adjustment Run below.



To pay an employee (or employees) outside of a normal pay frequency you should process an Adjustment Pay Run. Some of the common scenarios that may require you to do an Adjustment Pay Run:

  • Deal with over or under payments
  • Make an adjustment to a previously posted/paid pay run
  • Include missed items from a previously posted/paid pay run
  • Process one-off, out of cycle payments for things like bonuses

Get it right!

This page provides generic instructions and specific steps for a number of common scenarios. All of the steps and fields are also covered in theĀ Process a Pay run Guide.Ā Depending on your scenario, you may need to set/unset some fields and enter different information at various stages to what is described.

Initiating an Adjustment Pay Run

  1. From the menu, selectPayroll Administration > Payroll Activities > Start New Pay Run

  2. From the Pay Run Type drop down select Adjustment
  3. Period Start Date - the start date for the pay run you're running - if you are adjusting an existing run, match these dates
  4. Pay DateĀ - the Date you want on the EFT file and payment journal & payslips -Ā if you are adjusting an existing run, match this date
  5. Skip Pay Components - the pay run will not bring in the employees pay components if this is marked. Do not tick Auto Pay.Ā 
  6. Select the Employees from the list below that you want to pay
  7. Click the Submit button


Do not use the Auto Pay function when running an adjustment run.

Missed Pay/Hours

  1. At theĀ Enter Employee TimeĀ stage, adjust each employee's time accordingly. If there are no hours to add click Skip and move on to step 4.

    Skipping is important!

    If you are not adjusting something time related you MUST press "Skip".


    It's important to remember:
    You should set the hours to what they are owed as any time entered here will be on-top of what the employee was already paid in the standard payrun
    Therefore, if the employee's total hours for the week were 40 but were only paid 25 then you should set the Hours field to be the difference - I.e. what they're owed (15 hours)For more information seeĀ Enter Employee Time of theĀ Pay Run Processing Guide

  2. Click Add after completing each row
  3. Click the Submit button once you have entered time for each employee
  4. If you have any additional pay to add -Ā click theĀ Enter One OffĀ  button at the Process Payslips stage

  5. Enter your one-offs (adjustments)
    For more information refer to Enter One Offs of theĀ Pay Run Processing Guide.Ā 

    Payslip details for processing?

    The system will also process existing One-Off details "for processing" and any One-Offs entered in advance with a date within the pay run period.


  6. Click Add after completing each row
  7. Remember to clickĀ SubmitĀ once complete

  8. At theĀ Process PayslipsĀ stage, also clickĀ SubmitĀ to complete processing of the payslips and move onto theĀ Approve PayslipsĀ stage

  9. At the Approve Payslips stage review each payslip, paying special attention to the figures includingĀ the relevant tax & NI lines.
    If you make any changes to a payslip then you will need to recalculate it - for more information see Recalculating a PayslipĀ 
    You may also want review theĀ Approve PayslipsĀ page of theĀ Pay Run Processing Guide
  10. Once you're finished reviewing the payslips, click theĀ SubmitĀ button to move onto posting and paying the pay run
  11. Once you have posted and paid the Adjustment Run report it to the HMRC - please review theĀ Reporting an Adjustment RunĀ stage.

Claiming Back an Overpayment

  1. At theĀ Enter Employee TimeĀ stage,Ā click theĀ SkipĀ button

  2. At theĀ Process PayslipsĀ stage, click theĀ Enter One OffĀ button
  3. On the Enter Payslip Details page - for each employee that you need to claim back pay, enter in these as negative figures for the pay component you are reducing
    E.g. if you have overpaid base salary, use the Sub Type Base Salary and the amount to claim back as a negative figure
  4. Click Add after completing each row
  5. Once you have entered all relevant lines, click Submit to complete processing of the payslips and move onto theĀ Approve PayslipsĀ stage
    Ā Ā 
  6. At theĀ Approve PayslipsĀ stage review each payslip, paying special attention to the figures, includingĀ the relevant tax and NI lines.
    If you make any further changes to a payslip then you will need to recalculate it - for more information seeĀ Recalculating a Payslip
    You may also want review theĀ Approve PayslipsĀ page of theĀ Pay Run Processing Guide

    This will not calculate the Pension refund for the overpayment. You will need to calculate these and add them in as payslip details with the refund amount as a negative. Please see instruction on pension refunds here.Ā 

    When recalculating the payslip with these pension payslip details you will need to untick "Reprocess Pensions".



    If the employee has nil net pay then you cannot finalise using EFT. You will need to:

  7. Update the employee record "Net Pay method" on the payroll tab to "Manual Online"
  8. At the "Pay Pay Run" stage untick "EFT"
  9. Select the GL bank account and "Pay" - This will create the negative journals and finalise the payslip to paid.
  10. Update employee record "Net Pay method" on the payroll tab back to "EFT"
  11. Once you have posted and paid the Adjustment Run report it to the HMRC -Ā Reporting an Adjustment Run

Reporting an Adjustment Run

  1. Initiate FPS
  2. Edit the RTI Activity
  3. Set the Late Reason e.g. "H: Correction to Earlier Submission" or any other reason as required.
  4. Save
  5. Review the information and submit the RTI when happy.